pscedu / singularity-guppy

Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.

singularity-guppy

Singularity recipe for guppy.

Installing the container on Bridges 2

Copy the

• SIF file
• and the scripts

to /opt/packages/guppy/6.0.0.

Copy the file modulefile.lua to /opt/modulefiles/guppy as 6.0.0.lua.

Building the image using the recipe

To build the image locally

Run the script build.sh to build image locally.

bash ./build.sh

To build the image remotely

Run the script rbuild.sh to build image remotely.

bash ./rbuild.sh

To run tests

To run the available tests, run the command

bash ./test.sh

---

Copyright © 2020-2024 Pittsburgh Supercomputing Center. All Rights Reserved.

The Biomedical Applications Group at the Pittsburgh Supercomputing Center in the Mellon College of Science at Carnegie Mellon University.