plger

Pierre-Luc's repositories

scDblFinder

Methods for detecting doublets in single-cell sequencing data

Language:RGPL-3.0140 5 77

pipeComp

A R framework for pipeline benchmarking, with application to single-cell RNAseq

Language:RGPL-3.040 4 9

RNAontheBENCH

A benchmarking resource for RNAseq quantification and differential expression analysis methods

Language:RGPL-3.07 20

sechm

Wrapper around ComplexHeatmap for SummarizedExperiment objects

Language:R5 3 1

SEtools

A R package with tools for working with the SummarizedExperiment class.

Language:R2 1 2

overlapper

A shiny app to explore overlaps between lists

Language:R1 20

plPlotTranscripts

Dynamic plots of transcripts structure using plotly

Language:RGPL-3.01 20

tinySEV

Simple shiny SummarizedExperiment Viewer

Language:RGPL-3.01 10

7q11ngn2

Data and code relative to the study of 7q11.23 copy-number alterations in human Ngn2-driven iNeurons

Language:HTML010

bigAndSmallOrganoids

Comparison of the scRNAseq of big and small organoids

000

clustView

shiny viewer for browsing and annotating clusters

Language:R000

diffUTR_paper

Accompanies the diffUTR paper.

Language:TeX020

iPSCpoweR

transcriptomics-based evaluation of experimental designs for iPSC disease modeling

Language:RGPL-3.002 4

iSEE_gviz

custom gviz panel for iSEE

Language:R02 2

material

Material for course STA426 at UZH, Fall Semester 2020

Language:HTMLMIT010

motifmatchr

Fast motif matching in R

Language:C++GPL-3.0000

OrchestratingSingleCellAnalysis

Content for the OSCA Book.

Language:TeX010

OSCA.advanced

Advanced steps of the OSCA book

Language:TeX000

scDblFinder_paper

Code for the scDblFinder paper

Language:HTML020

SRAdownload

Bash script to download fastq files from the SRA, with priority to european servers

Language:ShellGPL-3.0010