Beast code in Giters

ETHZ-INS's repositories

DLCAnalyzer

R Scripts to analyze deep lab cut point data and related data

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BehaviorFlow

Code package that allows meta analyses of unsupervised behavior results

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The diffUTR R package streamlines differential exon usage (DEU) analyses, and leverages existing DEU tools and alternative poly-adenylation site databases to enable differential 3' UTR usage analysis.

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scanMiR

A set of tools for scanning for miRNA binding sites and working with affinity models

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enrichMiR

miRNA target enrichment analysis

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epiwraps

Wrappers for dealing and plotting with epigenomics data

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ethEpigen2023_materials

Materials for the 2023 ETH course "Bioinformatic approaches to regulatory genomics and epigenomics"

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pupillometry

A shiny app for pupillometry data analysis

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DTFAB

Benchmark of methods for Differential TF activity from ATAC-seq data

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Privitera-et.-al.-2023

Effects of different NA modulations on the acute stress response

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StressomeExplorer

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stressTRAPreanalysis

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circRNAs

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enrichMiR_benchmark

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scanMiR_paper

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scanMiRApp

Shiny app (and further functionalities) for scanMiR

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Sperm-RNA-Dex

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atac_frag_simulation

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DTFAIB

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enrichMiR_paper

scripts accompanying the enrichMiR paper

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ethEpigen2024_materials

Materials for the 2024 ETH course "Bioinformatic approaches to regulatory genomics and epigenomics"

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Fischer-Kretschmer-et-al.-2023

Code, objects and rendered rmarkdowns for

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Glucorticoid-protacs

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MG_A549

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scanMiRData

miRNA affinity models for the scanMiR package

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