phue

limix

Linear mixed model for genomic analyses.

models

Models and examples built with TensorFlow

aradeepopsis

bioconda-recipes

Conda recipes for the bioconda channel.

Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

configs

Config files used to define parameters specific to compute environments at different Institutions.

gwaR

A collection of R functions to conduct GWAS analysis (in arabidopsis gwaRabidopsis)

GWAS-nf

Nextflow pipeline to run genome wide association studies using limix

hlatyping

Precision HLA typing from next-generation sequencing data

jupyter-nextflow-proxy

mamba

The Fast Cross-Platform Package Manager

MARVEL

The MARVEL assembler

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nextflow

A DSL for data-driven computational pipelines

nextflowspawner

Spawn Nextflow pipelines from Jupyterhub and configure them interactively

noodles

Bioinformatics I/O libraries in Rust

oeawai

Material of the ÖAW AI Summer School

pangenome

Renders a collection of sequences into a pangenome graph.

reticulate

R Interface to Python

rna_seq_kallisto1

nextflow pipeline for single read rna-seq

scikit-image-feedstock

A conda-smithy repository for scikit-image.

singularity-jupyterlab-minimal

minimall Jupyterlab environment for CLIP, conda based

slurm-utils

A few utilities for use on a SLURM cluster

slurmformspawner

JupyterHub SlurmSpawner with a dynamic spawn form

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

test-datasets

Test data to be used for automated testing with the nf-core pipelines

tools

Python package with helper tools for the nf-core community.

TRG-ImageProcessing

Swarts Lab CNN stuff