Padraig Gleeson's repositories
ConnectomeToolbox
Information on published connectomics data related to C. elegans
Corpus
Deevloping a corpus of literature on C. elegans
openneurolab
Gleeson Lab of Open Neuroscience & AI @ UCL
testpoint3
Test
neuralensemble-docker
Docker images for neuroscience
openworm_docs
Documentation for OpenWorm, i.e. docs.openworm.org
sibernetic
This is a C++ implementation of the Contractile SPH (Electrofluid) algorithm applied to C. elegans locomotion
morphology_include
Test for https://github.com/NeuroML/NeuroML2/issues/150
DANDIArchiveShowcase
Scripts for interacting with the DANDI Archive
TDANN
Topographic Deep Artificial Neural Networks
NetPyNE-UI
NetPyNE User interface
tvb-multiscale
Integration between TVB and NEST, for multiscale (co)simulations .
wormneuroatlas
Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/
dandi-archive
DANDI API server and Web app
ngc-learn
NGC-Learn: Predictive Coding and Neurobiologically-Motivated Learning in Python
modelspec
Functionality for specifying models & enabling automatic serialization - will be used by MDF & NeuroMLlite
UCL_NeuroDataShare2023
examples of scripts how to use IBL-BWM dataset
CE_locomotion
Neuromechanical model of locomotion in C. elegans (in collaboration with Dr. Erick Olivares and Prof. Randall Beer)
M1_NetPyNE_CellReports_2023
Multiscale model of mouse primary motor cortex (M1) circuits developed in NetPyNE
testerweb
Senses in Motion Symposium website
FunctionalScala
The website for Functional Scala
Neuropeptide-Connectome
Scripts to run the analysis shown in the paper https://doi.org/10.1101/2022.10.30.514396
gsoc2016__brian2lems
Google Summer of Code project 2016 (Importing and exporting simulator-independent model-descriptions with the Brian simulator)
GoCModel_Basic
network of gocs with low frequency background inputs