OpenSourceBrain's repositories
AllenInstituteNeuroML
Example files to test interaction between models developed at the Allen Brain Institute and NeuroML
WilsonCowan
Wilson–Cowan model
MejiasEtAl2016
Implementation of Mejias et al. 2016: Feedforward and feedback frequency-dependent interactions in a large-scale laminar network of the primate cortex
osb-model-validation
Tools for automated model validation in OpenSourceBrain projects
OpenCortex
A framework for building cortical network models on OSB
Brunel2000
Sparsely connected spiking neuron network from Brunel 2000
CelegansNeuromechanicalGaitModulation
C. elegans neuromechanical gait modulation model from Boyle, Berri and Cohen 2012
DANDIArchiveShowcase
Scripts for interacting with the DANDI Archive
NetPyNEShowcase
NetPyNE & NeuroML interactions
PyNNShowcase
A repository for testing interactions/conversions between NeuroML & PyNN
SmithEtAl2013-L23DendriticSpikes
Model from: Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo, Smith, Smith, Branco & Häusser, Nature 2013
BahlEtAl2012_ReducedL5PyrCell
A set of reduced models of layer 5 pyramidal neurons from Bahl et al. 2012
SolinasEtAl-GolgiCell
GitHub repository for an OSB project containing a cerebellar Golgi cell based on Solinas et al 2007
BrianShowcase
A testbed for interactions between Brian and NeuroML2/LEMS
ghk-nernst
Using Goldman-Hodgkin-Katz and Nernst from LEMS/NeuroML
moose-core
C++ basecode and python scripting interface
NeuroMorpho
Set of example morphologies taken from NeuroMorpho.org in NeuroML format
OSB_Videos
Some ideas for introductory video for OSB website
SBMLShowcase
OSB showcase of interactions between SBML and NeuroML
StochasticityShowcase
A repository for neuronal models containing stocastic elements (e.g. input currents, syanpses, ion channels) in various formats
ArborShowcase
Examples of Arbor<->NeuroML
MOOSEShowcase
Showcase project illustrating interactions between MOOSE & NeuroML
NESTShowcase
Mapping NeuroML2/LEMS to NEST
OlfactoryTest
A repository for testing conversion of a number of elements (mainly ion channels) from olfactory bulb models to NeuroML 1/2
OSB_homepage
OSB homepage