OpenSourceBrain

AllenInstituteNeuroML

Example files to test interaction between models developed at the Allen Brain Institute and NeuroML

OSBv2

An updated version of the Open Source Brain platform

WilsonCowan

Wilson–Cowan model

MejiasEtAl2016

Implementation of Mejias et al. 2016: Feedforward and feedback frequency-dependent interactions in a large-scale laminar network of the primate cortex

osb-model-validation

Tools for automated model validation in OpenSourceBrain projects

OpenCortex

A framework for building cortical network models on OSB

Brunel2000

Sparsely connected spiking neuron network from Brunel 2000

CelegansNeuromechanicalGaitModulation

C. elegans neuromechanical gait modulation model from Boyle, Berri and Cohen 2012

OSB_API

API to access contents of OSB repository. Currently a simple Python API is available

DANDIArchiveShowcase

Scripts for interacting with the DANDI Archive

NetPyNEShowcase

NetPyNE & NeuroML interactions

PyNNShowcase

A repository for testing interactions/conversions between NeuroML & PyNN

SmithEtAl2013-L23DendriticSpikes

Model from: Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo, Smith, Smith, Branco & Häusser, Nature 2013

BahlEtAl2012_ReducedL5PyrCell

A set of reduced models of layer 5 pyramidal neurons from Bahl et al. 2012

SolinasEtAl-GolgiCell

GitHub repository for an OSB project containing a cerebellar Golgi cell based on Solinas et al 2007

TheVirtualBrainShowcase

BrianShowcase

A testbed for interactions between Brian and NeuroML2/LEMS

ghk-nernst

Using Goldman-Hodgkin-Katz and Nernst from LEMS/NeuroML

moose-core

C++ basecode and python scripting interface

NeuroMorpho

Set of example morphologies taken from NeuroMorpho.org in NeuroML format

OSB_Videos

Some ideas for introductory video for OSB website

SBMLShowcase

OSB showcase of interactions between SBML and NeuroML

StochasticityShowcase

A repository for neuronal models containing stocastic elements (e.g. input currents, syanpses, ion channels) in various formats

243446

Voltage- and Branch-specific Climbing Fiber Responses in Purkinje Cells (Zang et al 2018)

262670

Locust olfactory network with GGN and full KC population in the mushroom body (Ray et al 2020)

ArborShowcase

Examples of Arbor<->NeuroML

MOOSEShowcase

Showcase project illustrating interactions between MOOSE & NeuroML

NESTShowcase

Mapping NeuroML2/LEMS to NEST

OlfactoryTest

A repository for testing conversion of a number of elements (mainly ion channels) from olfactory bulb models to NeuroML 1/2

OSB_homepage

OSB homepage