OpenSourceBrain

OpenSourceBrain

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Home Page:www.opensourcebrain.org

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OpenSourceBrain's repositories

AllenInstituteNeuroML

Example files to test interaction between models developed at the Allen Brain Institute and NeuroML

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OSBv2

An updated version of the Open Source Brain platform

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WilsonCowan

Wilson–Cowan model

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MejiasEtAl2016

Implementation of Mejias et al. 2016: Feedforward and feedback frequency-dependent interactions in a large-scale laminar network of the primate cortex

osb-model-validation

Tools for automated model validation in OpenSourceBrain projects

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OpenCortex

A framework for building cortical network models on OSB

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Brunel2000

Sparsely connected spiking neuron network from Brunel 2000

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CelegansNeuromechanicalGaitModulation

C. elegans neuromechanical gait modulation model from Boyle, Berri and Cohen 2012

OSB_API

API to access contents of OSB repository. Currently a simple Python API is available

DANDIArchiveShowcase

Scripts for interacting with the DANDI Archive

NetPyNEShowcase

NetPyNE & NeuroML interactions

PyNNShowcase

A repository for testing interactions/conversions between NeuroML & PyNN

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SmithEtAl2013-L23DendriticSpikes

Model from: Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo, Smith, Smith, Branco & Häusser, Nature 2013

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BahlEtAl2012_ReducedL5PyrCell

A set of reduced models of layer 5 pyramidal neurons from Bahl et al. 2012

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SolinasEtAl-GolgiCell

GitHub repository for an OSB project containing a cerebellar Golgi cell based on Solinas et al 2007

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BrianShowcase

A testbed for interactions between Brian and NeuroML2/LEMS

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ghk-nernst

Using Goldman-Hodgkin-Katz and Nernst from LEMS/NeuroML

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moose-core

C++ basecode and python scripting interface

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NeuroMorpho

Set of example morphologies taken from NeuroMorpho.org in NeuroML format

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OSB_Videos

Some ideas for introductory video for OSB website

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SBMLShowcase

OSB showcase of interactions between SBML and NeuroML

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StochasticityShowcase

A repository for neuronal models containing stocastic elements (e.g. input currents, syanpses, ion channels) in various formats

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243446

Voltage- and Branch-specific Climbing Fiber Responses in Purkinje Cells (Zang et al 2018)

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262670

Locust olfactory network with GGN and full KC population in the mushroom body (Ray et al 2020)

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ArborShowcase

Examples of Arbor<->NeuroML

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MOOSEShowcase

Showcase project illustrating interactions between MOOSE & NeuroML

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NESTShowcase

Mapping NeuroML2/LEMS to NEST

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OlfactoryTest

A repository for testing conversion of a number of elements (mainly ion channels) from olfactory bulb models to NeuroML 1/2

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OSB_homepage

OSB homepage

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