OpenWorm

OpenWorm

Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

sibernetic

This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

owmeta

Unified, simple data access python library for data & facts about C. elegans anatomy

c302

The c302 framework for generating multiscale network models of C. elegans

muscle_model

Model of C elegans body wall muscle based on Boyle & Cohen 2008

openworm_docs

Documentation for OpenWorm, i.e. docs.openworm.org

hodgkin_huxley_tutorial

A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook

org.geppetto.frontend

Geppetto Java frontend bundle

openworm.github.io

OpenWorm main website

org.geppetto.core

Geppetto core bundle

pygeppetto

Python Library to create, load, edit and save a Geppetto Model

tracker-commons

Compilation of information and code bases related to open-source trackers for C. elegans

org.geppetto.simulation

Generic simulation bundle for Geppetto

WormWorx

C. elegans simulator

geppetto-client

The web client of a Geppetto application

NeuroPAL

Scripts to analyse and convert NeuroPAL datasets

OpenWormData

owmeta-core

Core library for owmeta

.github

The OpenWorm organisation template repository.

JohnsonMailler_MuscleModel

C. elegans muscle model from Johnson & Mailler 2015

org.geppetto.datasources

owmeta-bundles

Bundles for owmeta

bt-gsoc-2019

End to end process of the Framework including a BitTorrent Client, Access Control and Data Integrity checks.

CE_locomotion

Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

CelegansNeuromechanicalGaitModulation

C elegans Neuromechanical Gait Modulation Model

wormneuroatlas

Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/

ConnectomeToolbox

Information on published connectomics data related to C. elegans

NemaNode

Interactive map of neural connections in the nematode C. elegans. Online at http://nemanode.org.

NicolettiEtAl2019_NeuronModels

Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)

VarshneyEtAl2011

C. elegans connectome analysis