Perfus

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

bedtools2

bedtools - the swiss army knife for genome arithmetic

Flye

De novo assembler for single molecule sequencing reads using repeat graphs

canu

A single molecule sequence assembler for genomes large and small.

aiogram_dialog

GUI framework on top of aiogram

gnina

A deep learning framework for molecular docking

Unicycler

hybrid assembly pipeline for bacterial genomes

RagTag

Tools for fast and flexible genome assembly scaffolding and improvement

basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

pavian

🌈 Interactive analysis of metagenomics data

miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

airtable.py

Python interface to the Airtable's REST API

Jupyter_Dock

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

kraken

Kraken taxonomic sequence classification system

qvina

Accurately speed up AutoDock Vina

smina

centrifuge

Classifier for metagenomic sequences

moclo

Modular cloning simulation with the MoClo framework in Python

napari_zeiss

Use Napari Viewer to display CZI images

seq-benchmarks

farrowandball

a set of farrow&ball-inspired palettes for ggplot2

ImageJ-scripts

Some image processing scripts

autodock-vina