percyfal

cubed

Bounded-memory serverless distributed N-dimensional array processing

rye

a Hassle-Free Python Experience

cookiecutter-hypermodern-python

Hypermodern Python Cookiecutter

direnv

unclutter your .profile

msprime

Simulate genealogical trees and genomic sequence data using population genetic models

workshop-pgip

Population Genomics in Practice main website

el-easydraw

Embedded drawing tool for Emacs

d4-format

The D4 Quantitative Data Format

csvtk

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

docker-centos7-slurm

Slurm Docker Container on CentOS 7

SLiM

SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.

sgkit

Scalable genetics toolkit

tskit

Population-scale genomics

ttsim

A simulator for the Turing Tumble

orgmode-accessories

Add ons for orgmode

relate

Software for estimating genome-wide genealogies for thousands of samples

tskit

Analyse, create and manipulate tree sequences.

mdBook

Create book from markdown files. Like Gitbook but implemented in Rust

rootstock

Clone me to create your Manubot manuscript

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

doc

Documentation of the Snakemake-Profiles project.

yasnippet

A template system for Emacs

snakemakelib

Snakemake library for bioinformatics programs, with a focus on next-generation sequencing

snakemake-rules

Library of snakemake rules.

bioconda-recipes

Conda recipes for the bioconda channel.

pycon_2015_bokeh_talk

piper

A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (make sure you fork from there)

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses