percyfal

slurm

Cookiecutter for snakemake slurm profile

pgip-exercises

Population Genomics in Practice - tutorials and exercises

tswf

Whole genome tree sequence analyses

cookiecutter-nbis-project

cookiecutter for NBIS projects

nbis-project-admin

NBIS project administration utilities

datasources-smk

Snakemake workflow to setup data sources

bio2zarr

Convert bioinformatics file formats to Zarr

bokeh

Interactive Data Visualization in the browser, from Python

d4-format

The D4 Quantitative Data Format

d4utils

Python utilities to work with d4 coverage files

GARG

Genealogies and Ancestral Recombination Graphs

manticore-nf

nbis-course-quarto

NBIS course quarto template

percyfal.github.io

percyfal github io pages

pgip-jlite

JupyterLite test for pgip

pgip-r

pgtk

Population genomics toolkit

quarto-test

Test quarto actions

sgkit

Statistical genetics toolkit

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-v7-github-action

A Github action for running a Snakemake workflow

stdpopsim

A library of standard population genetic models

Training-Tech-shorts

Short lessons, training various technologies useful to our work.

tree-sitter-eidos

tsdate

Infer the age of ancestral nodes in a tree sequence.

tseda

tsinfer

Infer a tree sequence from genetic variation data.

tsqc

Utilities for evaluating inferred tree sequences

tswf-smk

Tree sequence workflow

workshop-biodiversity-summit