MyersGroup / relate

Software for estimating genome-wide genealogies for thousands of samples

Relate

Software to estimate genome-wide genealogies with recombination for thousands of samples

The version here is under constant development and may differ slightly from the published version available at https://myersgroup.github.io/relate/.

Please email bug reports or questions to [e-mail]

Citation:

• Leo Speidel, Marie Forest, Sinan Shi, Simon Myers. A method for estimating genome-wide genealogies for thousands of samples. Nature Genetics 51: 1321-1329, 2019.
• Leo Speidel, Lara Cassidy, Robert W. Davies, Garrett Hellenthal, Pontus Skoglund, Simon Myers. Inferring population histories for ancient genomes using genome-wide genealogies. bioRxiv:2021.02.17.431573.

Requirements

Relate requires C++14 and cmake version 3.1.

Installation

Download Relate from this git repository to a local directory. Then execute

cd PATH_TO_RELATE/
mkdir build
cd build
cmake ..
make

Documentation

see https://myersgroup.github.io/relate/.