parklab / HiNT

HiC for copy Number variation and Translocation detection

parklab/HiNT Issues

Bug? IndexError: list index out of range
Updated 4 months ago1
Deprecated `.ix` Pandas method causes `hint cnv` to fail.
Updated 6 months ago1
TypeError: 'numpy.float64' object cannot be interpreted as an integer
Updated 6 months ago
Access denied to references files
Closed 7 months ago
ValueError: row index exceeds matrix dimensions
Updated a year ago1
Always report ERROR: path to the matrixfile is not valid.
Updated a year ago3
How to make reference files for other species
Updated 2 years ago
Hint reference and background files not available anymore.
Updated 2 years ago3
Enzyme used in Hi-C experiment
Updated 2 years ago1
tabix.TabixError: Can't open the index file.
Updated 2 years ago
Error running CNV from .hic files with hg38
Updated 2 years ago
A bug like code injection if prefix name contains underline
Updated 2 years ago1
background matrix
Updated 2 years ago2
Is background matrices necessary?
Updated 2 years ago1
KeyError: 'chrom' using your docker for 'hint tl' with cooler input
Updated 2 years ago2
Errors in installing HiNT via conda
Updated 3 years ago1
MemoryError
Updated 4 years ago
mm10 GC file empty
Closed 4 years ago
Can HiNT be used for genomes of other species, like in plants?
Updated 4 years ago
error finding Hint module
Updated 4 years ago
HiNT TL with cooler output
Updated 5 years ago
Error: Unable to access jarfile None
Closed 5 years ago1
hint cnv -f juicer: TypeError: 'int' object is not subscriptable
Updated 5 years ago2