Pablo Marin-Garcia's repositories
neo4j-graph-datasets
Imports and visualizations of different public datasets into Neo4j
pmgEnsembl
my personalized Ensembl API for my perl-medical-genetics modules
argus
A Python engine for testing and benchmarking REST web services
bedtools2
A powerful toolset for genome arithmetic.
bionetdb
BioNetDB implements a storage engine to work with biological networks using a NoQSL Graph database
clean-python
Source Code for 'Clean Python' by Sunil Kapil
click-repl
Subcommand REPL for click apps
customized_upset_plots
Make customized upset plots: from raw data to plots
docm
Rails frontend to The Genome Institute's database of curated mutations (DoCM)
fold
FOLD file format for origami models, crease patterns, etc.
homebrew-ensembl
Core formula for Ensembl
jsorolla
JSorolla is a JavaScript Library for biological and genomic data visualization
JupyterVTK
Interactive Notebook for 3D Visualization of VTK files
opencga
An Open Computational Genomics Analysis platform for big data processing and analysis in genomics
opentargets-py
Python client for the Open Targets REST API at targetvalidation.org
recentrifuge
Recentrifuge: robust comparative analysis and contamination removal for metagenomic data
rich
Rich is a Python library for rich text and beautiful formatting in the terminal.
SciGraph
A Neo4j backed ontology store
The-Broad-Institute-Single-Cell-RNA-Seq-Data-Set
Visualize cancer genomes with FAIR single-cell RNA-seq data
tutorial
This is a tutorial we are using for Django Girls workshops
vismapper
An interactive web tool to manage sequencing data for the detection of viral insertion sites in gene therapy experiments.
www.htslib.org
The htslib.org web site