pamag

litgpt

20+ high-performance LLMs with recipes to pretrain, finetune and deploy at scale.

LLMs-from-scratch

Implementing a ChatGPT-like LLM in PyTorch from scratch, step by step

LLM-workshop-2024

A 4-hour coding workshop to understand how LLMs are implemented and used

jailbreak_llms

[CCS'24] A dataset consists of 15,140 ChatGPT prompts from Reddit, Discord, websites, and open-source datasets (including 1,405 jailbreak prompts).

biotest

Generate random test data for bioinformatics

cutadapt

Cutadapt removes adapter sequences from sequencing reads

terminal_markdown_viewer

Styled Terminal Markdown Viewer

fluentui-emoji

A collection of familiar, friendly, and modern emoji from Microsoft

awesome-llm-apps

Collection of awesome LLM apps with RAG using OpenAI, Anthropic, Gemini and opensource models.

imodelsX

Scikit-learn friendly library to interpret, and prompt-engineer text datasets using large language models.

figeno

Tool for plotting sequencing data along genomic coordinates.

CHM-eval

folio

:scroll: A digital whiteboard for sketching, annotating and prototyping

siimple

The minimal and themeable CSS toolkit for flat and clean designs

unicss

:crystal_ball: Universal and themeable CSS-In-JS microlibrary

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

jsorolla

JSorolla is a JavaScript Library for biological and genomic data visualization

opencga

An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Please contact support@zettagenomics.com for bug report and feature requests.

bamtools

C++ API & command-line toolkit for working with BAM data

NGS-Variant-Analysis-training-2016

Adapted session for a one-day training

Dumper.py

Code to dump out any Python object to text in a way that aids debugging / useful logging.

comparing_NGS-mappers

code for a white paper on our WIki

ngs-tools

Scripts to help analysis of NGS data

venn-tools

R scripts to plot Venn diagrams for 2,3,4-way Venn from counts

code_snippets

lm-spanish

Official source for spanish Language Models and resources made @ BSC-TEMU within the "Plan de las Tecnologías del Lenguaje" (Plan-TL).

pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

sequence_braiding

ECCB2020

ECCB2020 tutorial: Using Deep Learning For Image and Sequence Analysis

explainshell

match command-line arguments to their help text