PK's repositories
residualbind
"Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.
exponential_activations
"Improving representations of genomic sequence motifs in convolutional networks with exponential activations" by Koo and Ploenzke (https://doi.org/10.1101/2020.06.14.150706)
DREAM-2022-Submission-High_Schoolers_Are_All_You_Need
High Schoolers Are All You Need Team
pEMv2
sytems-level diffusion analysis for single particle tracks undergoing normal/non-normal diffusion that can transition between diffusion states (https://journals.aps.org/pre/abstract/10.1103/PhysRevE.94.052412)
squid-manuscript
squid repository for manuscript analysis
squid-nn-old
surrogate quantitative interpretability for deepnets
tfmodisco-lite
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.