omicsnut

The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

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interpret

Fit interpretable models. Explain blackbox machine learning.

Language:C++MIT6177 144 441

stumpy

STUMPY is a powerful and scalable Python library for modern time series analysis

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rootstock

Clone me to create your Manubot manuscript

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redis-roaring

Roaring Bitmaps for Redis

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openbb-agents

R&D playground to play with agents and OpenBB

Language:Python329 9 7

fastq-dl

Download FASTQ files from SRA or ENA repositories.

Language:PythonMIT269 5 13

figeno

Tool for plotting sequencing data along genomic coordinates.

Language:PythonGPL-3.0238 6 16

biowasm

WebAssembly modules for genomics

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alfred

BAM Statistics, Feature Counting and Annotation

Language:C++BSD-3-Clause138 9 44

strobealign

Aligns short reads using dynamic seed size with strobemers

Language:C++MIT134 10 169

gam-changer

Editing machine learning models to reflect human knowledge and values

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GraffiTE

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

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