obophenotype / upheno

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

https://obophenotype.github.io/upheno/

obophenotype/upheno Issues

Ensure that all TOP level HPO and MP terms have corresponding uPheno classes
Updated 23 days ago10
Investigate why "uPheno:circulatory system phenotype" and "uPheno: integumental system phenotype" do not exist..
Updated a month ago2
Consider creating all Uberon system level phenotype classes manually for uPheno
Updated a month ago
CHEBI IDs used by HPO and other phenotype ontologies do not match those used by GO, RHEA, UniProt
Updated a month ago2
Some plural labels do not work
Updated 2 months ago1
Documentation: Dead link to OLS
Updated 3 months ago1
Dealing with GO obsoletion cell death
Updated 3 months ago
RPPR stats OBA
Updated 3 months ago
Add page documenting stakeholder meetings to documentation
Closed 3 months ago
Map APO entities to OBA / GO (or whatever else)
Updated 3 months ago5
Create a uPheno release product for data analysis
Updated 4 months ago2
Map APO modifiers to PATO
Updated 4 months ago10
Request new pattern for Incomplete structure
Updated 4 months ago4
Failure importing http://purl.obolibrary.org/obo/upheno/upheno_root_alignments.owl
Updated 5 months ago4
test cases to compare characteristic of vs characterisitc of part of
Updated 6 months ago2
new pattern: abnormallyAbsenceRateOfBiologicalProcess
Closed 9 months ago1
new pattern
Closed 9 months ago
MP-HPO phenotype alignment: check if axiom matches agree with text definitions
Closed 10 months ago6
Use case discussion for paper / + outreach group
Updated 10 months ago
upheno.owl cannot be parsed with Pronto
Updated a year ago4
Abnormal constriction of anatomical entity pattern template
Closed a year ago
Versionized download links
Updated a year ago1
Documentation request: "Normal" phenotypes
Updated a year ago
Documentation request: comparators in phenotype definitions
Updated a year ago
We documented the editors’ workflows for maintaining phenotype patterns and harmonizing
Closed a year ago
Create a basic Upheno toolkit for bioinformaticians
Updated a year ago
create a pattern for biological attribute severity
Updated a year ago2
create a pattern for adding anatomy subclass axioms
Updated a year ago1
update the pattern matches
Updated a year ago1
Investigate cases where the uPheno2 semantic similarity score is lower than the uPheno1 score
Updated a year ago1
Create a proper APO integration
Updated a year ago
Abnormally arched anatomical entity pattern template
Closed 2 years ago
Help match HPO and MP EQs
Updated 2 years ago2
Patterns with "part of" have the same name as counterparts
Updated 2 years ago12
Request a term for `voluntary control of defecation`
Updated 2 years ago
Initiate pattern review process with HPO
Updated 2 years ago2
version information is missing
Updated 2 years ago
Abnormally scaly anatomical entity pattern template
Updated 2 years ago
Add herniated anatomical entity pattern template
Closed 2 years ago1
Add abnormally dilated cellular component pattern template
Updated 2 years ago
Abnormally greasy anatomical entity pattern template
Closed 2 years ago
Abnormally glistening anatomical entity pattern template
Closed 2 years ago
New patterns for rate of continuous process
Closed 2 years ago
Update cystInLocation logical definition
Closed 2 years ago1
Abnormally opaque anatomical entity pattern template
Closed 2 years ago
Abnormally decreased water composition of anatomical entity pattern template
Updated 2 years ago
Add abnormally decreased wetness of anatomical entity pattern template
Closed 2 years ago1
Add abnormally dry anatomical entity pattern template
Closed 2 years ago2
New object property: cross-species analog
Updated 2 years ago2
Check how to deal with obsolete phenotype patterns
Updated 2 years ago1