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obophenotype / upheno

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

Home Page:https://obophenotype.github.io/upheno/

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Check how to deal with obsolete phenotype patterns

rays22 opened this issue · comments

commented

How IRIs should resolve after obsoletion?
Replaced by?

  • abnormalAbsenceOfMotilityOfCellularComponentInLocation
  • abnormallyDecreasedMotilityOfCellularComponentInLocation
  • abnormallyIncreasedMotilityOfCellularComponentInLocation
  • abnormalMotilityOfCellularComponent

Related issue: obophenotype/xenopus-phenotype-ontology#154

commented

Need to figure out how we handle obsolete patterns in case anyone is using these. Include in the SOP some information for what to do.Also look into using uPheno to track down usage and warn downstream ontologies.