obophenotype / upheno

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

Home Page:https://obophenotype.github.io/upheno/

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Dealing with GO obsoletion cell death

sbello opened this issue · comments

We need new patterns to deal with generic cell death as GO is obsoleting this term

See GO ticket geneontology/go-ontology#24680

discussions started in February 2023 in the minutes https://docs.google.com/document/d/1WrQanAMuccS-oaoAIb9yWQAd4Rvy3R3mU01v9wHbriM/edit?usp=sharing

Proposals:

  • create new terms under PATO viability for increased/decreased cell death and absence of viability
  • Viability relates to organism or population we could not use this for cells in an organism we would need new terms for this as well