Noah Yu Zhang's repositories
annotated_deep_learning_paper_implementations
tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
diffexpr_DESeq2_in_rpy2
Porting DESeq2 into python via rpy2
ffq_from_pachterlab
A tool to find sequencing data and metadata from public databases.
gget_from_pachterlab
🧬 gget enables efficient querying of genomic reference databases
Jyesselm_wrapped_vienna
a short python wrapper for the vienna rna package
scSports_old
Single-cell RNA Structure Probing Method
shapemapper2
Public repository for ShapeMapper 2 releases
StructureAnalysisTools_from_MustoeLab
StructureAnalysisTools_from_MustoeLab
The-Art-of-Linear-Algebra-zh-CN
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone", 线性代数的艺术中文版
zlib-searcher
search zlib/libgen index to get ipfs_cid. We don't save and provide files, we provide search. I hope everyone have a copy of the index locally, so that no need to rely on any centralized service.
arnie_from_DasLab
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
clipplotr_from_ulelab
A tool to facilitate comparative visualisation of CLIP data
dStruct_from_AviranLab
Method for identifying differential reactive regions from RNA structurome profiling data
EvoClustRNA_from_mmagnus
RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io
HemTools_from_YichaoOU
HemTools: a collection of NGS pipelines and bioinformatic analyses
infernal_from_EddyRivasLab
RNA secondary structure/sequence profiles for homology search and alignment
jupyter-book_from_excutablebooks
Create beautiful, publication-quality books and documents from computational content.
molcloud_from_whitead
Make a bunch of molecules
NEAR_from_jszavits
Non-Equilibrium Analysis of Ribosome profiling data
ParasoR_from_Risa_Carushi
Parallel solution for local RNA secondary structure analysis
PyDESeq2_owkin
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
PyRosetta.notebooks_from_RosettaCommons
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
pytorch-doc-zh_official
Pytorch 中文文档
RhoFold_for_3D_RNA_Structure_Training_and_Learning
Open source code for RhoFold: Fast and Accurate RNA 3D Structure Prediction with Deep Learning.
SAMFEO_for_RNA_Struc_Design
RNA Design via Structure-Aware Multi-Frontier Ensemble Optimization
WillKoehrsen-s-Data-Analysis
Data Science Using Python