noahpieta

pysradb

Package for fetching metadata and downloading data from SRA

AlgoDat

Algorithm & Data structures

awesome-python-cn

Python资源大全中文版，包括：Web框架、网络爬虫、模板引擎、数据库、数据可视化、图片处理等，由伯乐在线持续更新。

Cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

cNMF

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js

dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling

lihang-code

《统计学习方法》的代码实现

LinearFold

The new source code of the LinearFold, linear-time prediction for RNA secondary structures

loam_livox

A robust LiDAR Odometry and Mapping (LOAM) package for Livox-LiDAR

loompy

Python implementation of the Loom file format - http://loompy.org

machine_learning_refined

Notes, examples, and Python demos for the textbook "Machine Learning Refined" (published by Cambridge University Press).

missingno

Missing data visualization module for Python.

PHATE

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

playground

Play with neural networks!

pumpkin-book

《机器学习》（西瓜书）公式推导解析，在线阅读地址：https://datawhalechina.github.io/pumpkin-book

pyfiglet

An implementation of figlet written in Python

pyteiser

Python implementation of TEISER also capable of using SHAPE structural probing data

rmats-turbo

RME

RNA secondary structure prediction incorporating experimental constraints

RNA2Drawer

SCALE

Single-cell ATAC-seq analysis via Latent feature Extraction

SciencePlots

Matplotlib styles for scientific plotting

scimitar

Single Cell Inference of MorphIng Trajectories and their Associated Regulation (SCIMITAR)

seqlogo

Python port of the R Bioconductor `seqLogo` package

setup-ipsec-vpn

Scripts to build your own IPsec VPN server, with IPsec/L2TP and Cisco IPsec on Ubuntu, Debian and CentOS

single-cell-pseudotime

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

SingleCellTimeCourse

Head and neck cancer rna velocity scripts

UMI-tools

Tools for handling Unique Molecular Identifiers in NGS data sets