NeuroImaging PREProcessing toolS

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

nibabies

fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI

eddymotion

Open-source eddy-current and head-motion correction for dMRI.

nirodents

nipreps-book

fmripost-aroma

Run ICA-AROMA on fMRIPrep derivatives

nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

mriqc-learn

Learning on MRIQC-generated image quality metrics (IQMs).

fmriprep_stats

Automatic reports summarizing usage stats from Sentry.io

qkay

Manager for the quality assessment of large neuroimaging studies

synthstrip

Synthstrip integration to be used across nipreps

migas-server

nipreps.github.io

The NiPreps landing page

.github

Shared community health files

migas-py

A ready-to-go python package for communicating with a migas server

version-schemes

setuptools_scm plugin for nipreps version schemes

fmripost-phase

An attempt at an fMRIPost workflow for handling phase data

fmripost-rapidtide

A BIDS App for running rapidtide on a preprocessed fMRI dataset.

resampler

Single-shot resampling utility for nipreps derivatives

skeleton

A generic project skeleton for Python projects.

202405-sprint

Nipreps sprint, Cambridge, MA, May 15-17, 2024

acres

Data-loading utility for Python

fmripost-template

A generic fMRIPost workflow

gradunwarp

fork of HCP gradunwarp tool for Gradient Unwarping in Python

niprepspype

Ni[Preps]Pype: Workflows and interfaces for neuroimaging packages -- adaptation of NiPype to NiPreps