nipreps / niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

https://www.nipreps.org/niworkflows

nipreps/niworkflows Issues

`dim` attribute in `References` is incorrect for non-Freesurfer surfaces
Closed 5 days ago
Data loader fails with NiWorkflows installed in editable mode
Updated 13 days ago2
Distinguish between surface and volume spaces in `Reference`
Updated 18 days ago3
Set cal_max properly in ``IntensityClip``
Closed 2 months ago
mriqc not installed as dependency
Closed 2 months ago4
CI: AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
Closed 4 months ago
`niworkflows.utils.bids.collect_data` should drop unnecessary filters
Updated 4 months ago
Handle file read/write race in parallel computing
Updated 5 months ago3
Migrate tools from fMRIPrep (post-fit-apply restructure) to Niworkflows
Updated 6 months ago
Add ASL support
Closed 8 months ago
Mapping between MNI152NLin6Asym ijk-coordinates and CIFTI row indices differs from HCP
Closed a year ago6
ENH: Add PET to collect_data
Closed a year ago
Intersphinx mapping is mistargeting URLs
Updated a year ago
High likelihood of filesystem race in BIDSFreeSurferDir
Updated a year ago
Pandoc failures can lead to report failures
Updated a year ago
Pre-run freesurfer folder needs to be writable ?
Updated a year ago9
installation error on macOS 13 with homebrew python 3.11
Closed a year ago6
``ReadSidecarJSON`` always indexes the layout (or breaks)
Closed a year ago
Finalize the migration of visual elements to NiReports
Updated a year ago
DerivativesDataSink datatype coercion does not skip non-dtseries CIFTIs
Closed a year ago2
DerivativesDataSink does not extract entities from custom configuration
Closed a year ago3
Allow custom configurations in DerivativesDataSink
Closed 2 years ago2
Duplicated BinaryDilation interface (in morphology and nibabel)
Closed 2 years ago2
Missing metadata for `res` and `den` outputs
Updated 2 years ago1
Non-compliant CIFTI sidecar fields clashing with entities
Closed 2 years ago4
Latest version of traits (6.4.1) seems to break init_brain_extraction_wf
Closed 2 years ago2
Unit test broken
Closed 2 years ago8
Improve robustness of brain extraction pipeline
Updated 2 years ago8
[ENH] Datasinking MRTrix3's gradient files
Closed 2 years ago
Remove distutils from code
Closed 2 years ago
[BUG] Initializing a "nested" workflow result in reuse of pre-initialized one.
Closed 2 years ago7
CI failing [`get_data`]
Closed 2 years ago3
[ENH] Add PET query to collect_data in utils
Closed 2 years ago2
Add `test_masks` back into CI
Updated 2 years ago1
TypeError: unlink() got an unexpected keyword argument 'missing_ok'
Closed 2 years ago4
Update atime when copying FreeSurfer
Closed 2 years ago
[ENH] Default path patterns for DWI preprocessing outputs
Closed 2 years ago
Excessive padding when resampling zooms
Updated 2 years ago3
Add figure to facilitate CIFTI visualization
Closed 3 years ago4
Try CircleCI's docker layer caching
Updated 3 years ago
Matplotlib constraint
Closed 3 years ago2
Overhaul of the carpet plots
Updated 3 years ago1
Ease installation version restrictions
Updated 3 years ago
Multiversion documentation chooser fails when the HEAD of master is a tag commit
Updated 3 years ago
Okay to squash the streak of commits I've pushed to master?
Closed 3 years ago1
Detailed brain extraction reports
Updated 3 years ago2
Conclude integration of utilities in the brain extraction workflow
Updated 3 years ago
DerivativesDatasink corrupting files and bus error
Closed 3 years ago12
DerivativesDataSink not preventing gzip mtime from being set, leading to non-deterministic file checksums
Closed 3 years ago2
ValueError while building path
Closed 3 years ago2