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nikostr

nikostr

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restic

Fast, secure, efficient backup program

Language:GoLicense:BSD-2-ClauseStargazers:26707Issues:239Issues:2667

cupy

NumPy & SciPy for GPU

Language:PythonLicense:MITStargazers:9510Issues:127Issues:2323

stract

web search done right

Language:RustLicense:AGPL-3.0Stargazers:2162Issues:20Issues:92

engauge-digitizer

Extracts data points from images of graphs

Language:C++License:GPL-2.0Stargazers:1249Issues:68Issues:382

Jellyfish

A fast multi-threaded k-mer counter

Language:C++License:NOASSERTIONStargazers:474Issues:30Issues:183

BRAKER

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

Language:PerlLicense:NOASSERTIONStargazers:365Issues:22Issues:810

KMC

Fast and frugal disk based k-mer counter

Language:C++Stargazers:277Issues:10Issues:216

TransDecoder

TransDecoder source

Language:PerlLicense:NOASSERTIONStargazers:276Issues:17Issues:190

genomescope

Fast genome analysis from unassembled short reads

Language:JavaScriptLicense:Apache-2.0Stargazers:260Issues:20Issues:139

RepeatMasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

Language:PerlLicense:NOASSERTIONStargazers:231Issues:6Issues:259

purge_dups

haplotypic duplication identification tool

Language:CLicense:MITStargazers:209Issues:9Issues:147

FASTK

A fast K-mer counter for high-fidelity shotgun datasets

Language:CLicense:NOASSERTIONStargazers:117Issues:11Issues:24

LJA

Language:C++License:NOASSERTIONStargazers:110Issues:11Issues:38

genomescope2.0

Reference-free profiling of polyploid genomes

Language:RLicense:Apache-2.0Stargazers:105Issues:5Issues:0

ggheatmap

ggplot2 version of heatmap

Language:RStargazers:84Issues:1Issues:16

LiftOn

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

Language:PythonLicense:GPL-3.0Stargazers:64Issues:1Issues:28

OMArk

Language:PythonLicense:LGPL-3.0Stargazers:61Issues:6Issues:20

MBG

Language:C++License:MITStargazers:57Issues:4Issues:26

ProtHint

Protein hint generation pipeline for gene finding in eukaryotic genomes

Language:PythonLicense:NOASSERTIONStargazers:56Issues:4Issues:52

TSEBRA

TSEBRA: Transcript Selector for BRAKER

Language:PythonStargazers:47Issues:4Issues:42

oatk

A organelle de novo genome assembly toolkit

Language:CLicense:MITStargazers:45Issues:4Issues:12

MERQURY.FK

FastK based version of Merqury

Language:CLicense:NOASSERTIONStargazers:22Issues:5Issues:16

omamer

OMAmer - tree-driven and alignment-free protein assignment to sub-families

Language:PythonLicense:LGPL-3.0Stargazers:16Issues:8Issues:9

genomeassembler

Language:NextflowLicense:MITStargazers:16Issues:162Issues:38

shiny-k-mers

Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)

Language:RLicense:GPL-3.0Stargazers:13Issues:3Issues:8

Earth-Biogenome-Project-pilot

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

Language:NextflowLicense:GPL-3.0Stargazers:11Issues:34Issues:70

GENESCOPE.FK

A derivative of GenomeScope2.0 modified to work with FastK

Language:RLicense:Apache-2.0Stargazers:8Issues:2Issues:1

SexFindR

Language:RStargazers:6Issues:1Issues:2

zanfona

A genome assembly finishing tool

Language:PerlLicense:MITStargazers:5Issues:1Issues:1

Annotation-files-of-Stellera-chamaejasme

Stargazers:1Issues:1Issues:1