Beast code in Giters

nikostr's starred repositories

restic

Fast, secure, efficient backup program

Language:GoBSD-2-Clause26323 238 2646

cupy

NumPy & SciPy for GPU

Language:PythonMIT9411 128 2304

stract

web search done right

Language:RustAGPL-3.02148 20 91

engauge-digitizer

Extracts data points from images of graphs

Language:C++GPL-2.01244 68 382

Jellyfish

A fast multi-threaded k-mer counter

Language:C++NOASSERTION467 30 183

BRAKER

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

Language:PerlNOASSERTION359 22 805

TransDecoder

TransDecoder source

Language:PerlNOASSERTION270 17 191

KMC

Fast and frugal disk based k-mer counter

Language:C++269 10 216

genomescope

Fast genome analysis from unassembled short reads

Language:JavaScriptApache-2.0256 20 139

RepeatMasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

Language:PerlNOASSERTION228 6 257

purge_dups

haplotypic duplication identification tool

Language:CMIT207 9 147

FASTK

A fast K-mer counter for high-fidelity shotgun datasets

Language:CNOASSERTION116 11 22

LJA

Language:C++NOASSERTION109 11 38

genomescope2.0

Reference-free profiling of polyploid genomes

Language:RApache-2.0102 50

ggheatmap

ggplot2 version of heatmap

Language:R84 1 16

LiftOn

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

Language:PythonGPL-3.063 1 26

OMArk

Language:PythonLGPL-3.058 6 20

MBG

Language:C++MIT57 4 25

ProtHint

Protein hint generation pipeline for gene finding in eukaryotic genomes

Language:PythonNOASSERTION56 4 52

TSEBRA

TSEBRA: Transcript Selector for BRAKER

Language:Python47 4 42

oatk

A organelle de novo genome assembly toolkit

Language:CMIT32 4 11

MERQURY.FK

FastK based version of Merqury

Language:CNOASSERTION21 5 16

omamer

OMAmer - tree-driven and alignment-free protein assignment to sub-families

Language:PythonLGPL-3.016 8 9

genomeassembler

Language:NextflowMIT16 158 38

shiny-k-mers

Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)

Language:RGPL-3.013 3 8

Earth-Biogenome-Project-pilot

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

Language:NextflowGPL-3.011 34 70

GENESCOPE.FK

A derivative of GenomeScope2.0 modified to work with FastK

Language:RApache-2.08 2 1

SexFindR

Language:R6 1 2

zanfona

A genome assembly finishing tool

Language:PerlMIT5 1 1

Annotation-files-of-Stellera-chamaejasme

100