schatzlab / genomescope

Fast genome analysis from unassembled short reads

schatzlab/genomescope Issues

503 Service Unavailable
Updated 3 months ago
Unable to converge
Updated 4 months ago3
No file uploaded
Updated 5 months ago4
No file upload message
Updated 5 months ago5
error while using genomeScope
Updated 5 months ago4
No file upload message
Updated 5 months ago1
High heterozygous?
Updated 5 months ago2
How to produce vector graph (i.e. pdf), not bitmap image i.e. .png)?
Closed 5 months ago4
Strange genomescope result
Updated 6 months ago1
Low model fit while ran Genomescope 2.0
Closed 6 months ago
No file uploaded error message
Closed 6 months ago3
FAQ not up to date regarding ploidy
Updated 7 months ago1
potentially poor fitting model for proposed tetraploid
Updated 7 months ago1
smaller genome size and lower heterozygosity
Updated 8 months ago
only 1 peak in a heterozygous diploid
Closed 9 months ago4
strange result of HiFi data
Updated 9 months ago6
alloploid genome size estimate
Updated 9 months ago4
Two strains with different ploidy?
Updated 9 months ago3
Higher heterozygosity
Updated 9 months ago1
small bump explanation and -l parameter
Updated 9 months ago10
Hi, I have the same problem: No file uploaded.
Updated 10 months ago8
Estimate good max k-mer coverage
Updated 10 months ago3
Parameter: Average k-mer coverage for polyploid genome
Updated a year ago2
can't show the result
Updated a year ago3
Genome size underestimated comparing assembled data
Updated a year ago7
No graph generated
Closed a year ago2
No clear peak
Updated a year ago3
Unable to understand the plots for genomesize estimation
Updated a year ago4
Tetraploid genome size
Updated a year ago2
Coverage cutoff in genomescope2 command line
Updated a year ago1
File cannot be uploaded
Updated a year ago5
Help to identify the ploidy
Updated a year ago1
No histogram generated
Updated a year ago2
Genomescope does not converge even with a clear peak
Updated a year ago3
Help interpreting output
Updated 2 years ago2
failed to converge
Closed 2 years ago4
distinguishing recent WGD vs polypoidy in genomescope
Closed 2 years ago4
How to evaluate genomes with more than 6 ploidy
Updated 2 years ago1
How to define max_kmercov parameter
Updated 2 years ago
Error in if (k > readlength) { : missing value where TRUE/FALSE needed
Updated 2 years ago1
Curious plant Kmer spectra from HiFi reads
Closed 2 years ago4
Genome size estimation with HiFi reads
Closed 2 years ago2
GenomeScope Error message
Closed 2 years ago6
non-error peak potentially marked as error?
Closed 2 years ago2
some questions about the principle of genomescope
Updated 2 years ago3
Very High Heterozygosity?
Updated 2 years ago1
strange distribution/failed to converge
Closed 2 years ago
Low model fit while ran genomescope2
Updated 2 years ago2
Help with interpretation of genomescope2.0 output
Updated 2 years ago1
Strange genome size
Updated 2 years ago5