John's starred repositories
dbs_pd_beta_burst
Analysis code related to Pauls et al. 2022:Cortical beta burst dynamics are altered in Parkinson’s disease but normalized by deep brain stimulation
depthai_hand_tracker
Running Google Mediapipe Hand Tracking models on Luxonis DepthAI hardware (OAK-D-lite, OAK-D, OAK-1,...)
ephys-class
Course materials for COGS 280
pypreprocess
Preprocessing scripts for neuro imaging
Mathematics-for-ML
🧮 A collection of resources to learn mathematics for machine learning
field-echos
Project code for extracting neural population timescale from field potential data (LFP, ECoG, etc)
memoryStrupt
experimental strengthening and disruption of associative memory, using intracranial EEG
KPCA-MATLAB
MATLAB code for dimensionality reduction, feature extraction, fault detection, and fault diagnosis using Kernel Principal Component Analysis (KPCA).
tract2mesh
Convert tractography streamlines into meshes
PerceptToolbox
MATLAB Toolbox to extract JSON files from Medtronic Percept PC neurostimulator.
OlfactoryBulb
Biophysically Realistic Model of the Olfactory Bulb Mitral-Tufted-Granule Cell Pathway
eeg_commander
MATLAB pipeline for easy-to-program automated pre-processing of electroencephalogram (EEG) data using independent component analysis and statistically-robust detection of artifacts.
pyActigraphy
Python-based open source package for actigraphy data analysis
scatter_nice
scatter wrapper that actually creates useful plots by default
QuadrupedRobot
Open-Source,ROS Robot Dog Kit
lab-website-template
An easy-to-use, flexible website template for labs.
sortingQuality
Functions to assess quality of spike sorting results