John's repositories
Quinn2021_Waveform
Analysis scripts accompanying "Within-cycle instantaneous frequency profiles report oscillatory waveform dynamics" https://doi.org/10.1101/2021.04.12.439547
WaveMAP_Paper
This repo allows for the complete reproduction, from processed data, of all the main and supplemental figures in the manuscript Non-linear Dimensionality Reduction on Extracellular Waveforms Reveals Physiological, Functional, and Laminar Diversity in Premotor Cortex.
DBS_SingleUnit_Meta
Analysis Tools for DBS MER Data
beyond-bar-and-box-plots
Hands–on code to create and style chart alternatives with ggplot2
connectome_spectral_analysis
Repository for paper https://authors.elsevier.com/sd/article/S1053-8119(21)00884-3
Datalogger
Repository for analyzing natural social behavior usind deuteron datalogger
DBSegment
This is a deep learning-based method to segment deep brain structures and a brain mask from T1 weighted MRI.
DeepSqueak
DeepSqueak: A Deep Learning Based System for Quantification of Ultrasonic Vocalizations
Demos
Demos of coding, scripts, functions, and apps
drk_CodeRepo
all code prior to my lab at CU_attempt2
finetune_detr
trying out finetuning detr on small datasets
freerecall_travelingwaves
code for analyses in Mohan et al. 2024
pac_investigation
Investigating the link between spiking activity based beta bursts and lfp based beta activity using PAC
python-quickstart
MSLearn sample code
spectral_connectivity
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
timeseries-clustering-vae
Variational Recurrent Autoencoder for timeseries clustering in pytorch