natverse / fafbseg

Support functions for analysis of Drosophila connectomes especially the FAFB-FlyWire whole brain

https://natverse.org/fafbseg/

natverse/fafbseg Issues

add cave view queries
Closed 5 months ago1
Adapt to breaking changes in fafbseg-py
Closed 5 months ago5
use fafbseg in an renv, couldn't find cloud-volume
Closed 10 months ago4
an easy to use edgelist for flywire neurons
Closed 2 years ago4
flywire_raw2nm ignores user supplied voxdims
Closed 2 years ago
ngl_en/decode_scene should preserve original URL
Closed 2 years ago2
meshparty_skeletonize failure
Closed 2 years ago
bug in simple_python: pyembree package is not found
Closed 2 years ago1
Post fafbseg update - error when querying 'cambridge_celltypes' table in CAVE
Updated 2 years ago4
curl related timeout on spine.janelia.org
Closed 2 years ago1
L2cache data
Updated 2 years ago1
Permission issues in Windows when using simple_python
Updated 2 years ago7
fancr has problem with flywire_islatest for 64 bit ints
Closed 2 years ago1
don't get confused by long URLs containing stateserver details
Closed 2 years ago
flywire_set_token uses old token filename
Updated 2 years ago
flywire_updateids should update missing rootids if there is xyz/svid info
Closed 3 years ago1
bug in simple_python: installing skeletor twice
Closed 3 years ago1
cave-secret.json should now be preferred token location
Closed 3 years ago
flytable_list_rows limited to 50,000 rows
Closed 3 years ago
flywire_latestid(,method = "cave") broken by caveclient updates
Closed 3 years ago
python install issue certifi
Closed 3 years ago1
pyarrow version issue in pandas2df
Closed 3 years ago
flywire_ntpred() gives ids in numbers, not characters
Closed 3 years ago2
CAVE client synapse queries lag by one hour
Closed 3 years ago1
SSL certificate problem with some flywire/fanc queries
Closed 3 years ago
add flywire_adjacency_matrix
Closed 3 years ago2
Error when using cleft.threshold in flywire_partners_summary
Closed 3 years ago1
flywire_partner_summary fails when cleft.threshold > 0
Closed 3 years ago
dracor issue
Closed 3 years ago1
Using ngl_add_colours: retain segment order when displaying in flywire
Updated 3 years ago
ignore root ids without synapses in flywire_partner_summary()
Closed 3 years ago1
unique(ids) for flywire_partner_summary()
Closed 3 years ago1
ngl_add_colour need to fix df to list
Closed 3 years ago2
flywire_xyz2id() confuses 3 character coordinates with separate x y z coordinates
Closed 3 years ago
batch flywire_rootid lookups for faster synaptic partner finding
Updated 3 years ago1
consider caching expensive flywire id lookups
Updated 3 years ago8
Don't silently catch skeletor exceptions
Closed 3 years ago1
Vectorise flywire_xxx functions
Closed 3 years ago1
flywire_ntplot could have two facets, one for axon and another for dendrite
Updated 4 years ago1
ensure flywire_partners gives same return value for method spine or sqlite
Closed 4 years ago1
more informative error for flywire_xyz2id when coordinate space might be wrong
Closed 4 years ago2
Make sure flywire_change_log passes on tz
Closed 4 years ago
Installation issues: 'there is no package called memo'
Closed 4 years ago4
catch cases where neurons have no supervoxels (or synapses)
Updated 4 years ago1
Define seed points for (all) neurons within a region of interest
Updated 4 years ago1
ngl_segments should prefer flywire segmentation_with_graph layers
Closed 4 years ago
Make sure nt prediction functions can cope with multiple inputs
Closed 4 years ago
flywire_leaves should respect as_character
Closed 4 years ago2
Bug when fetching data for multiple partners
Closed 4 years ago
nglayers should have a print method
Updated 4 years ago