nanshanjin's repositories
2bRAD_denovo
Genome-wide de novo genotyping with 2bRAD
bioinformatics
Course materials for Computational Biology and Bioinformatics - BI462
metagenomics
metagenomics analysis
WGCNA
WGCNA pipeline
Bioinformatics_Scripts
A collection of scripts commonly used while running bioinformatics analyses on the Tulane University Cypress HPC
CPG
Building a Chinese pan-genome of 486 individuals
fastv
An ultra-fast tool to detect and visualize microbial sequences from sequencing data, and can be used to detect viral infectious diseases, like COVID-19.
galaxy-wrappers
Galaxy tools from South Green
GenomeAnalysis
Repository for project for Genome Analysis course at UU
GWAS_Pipelines
Instructions and helpful R code for Running GEMMA and GAPIT
InterpretableMLBook
《可解释的机器学习--黑盒模型可解释性理解指南》，该书为《Interpretable Machine Learning》中文版
MAKER-genome-annotations-tutorial
Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support
MVP
A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
NGS_data_processing
Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
popgen
Population genetics analyses
Population_Genomics_Scripts
Scripts of population genomics analysis
POPULATIONS_GENOMICS
populations_genomics
Python
All Algorithms implemented in Python
single-cell-rna-seq
A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
vim-colors-solarized
precision colorscheme for the vim text editor