subset obtained with fast5_subset does not work for guppy
ndierckx opened this issue · comments
Hi,
I made a subset of only 2 reads, but i get this error when i run guppy on that file: "Segmentation fault (core dumped)"
While on the original file guppy works fine.
Any idea what the problem could be?
Hi @ndierckx -- apologies for the delay, this one slipped through the net! Are you still having this issue? If so, could you please tell us what command you used to create the subset? Could we have the file that was created as well?
Hi,
No problem. The problem is fixed by using a sequencing summary file instead of a list of read ids.
It turns out when I used the list of read ids, the fast5 file was not containing the read data
There were no errors so not sure what the problem was but it works great with the sequencing summary file!
Ok, great -- glad you figured it out! We'll have a look at whether or not we can reproduce your original issue.