Jamie Morton's repositories
q2stats-workshops
Repository of qiime2 workshops to explore microbial ecology
biom-format
The Biological Observation Matrix (BIOM) Format Project
community-simulator
Simulate microbial community batch culture experiments.
driver
Utility Functions from Justin Silverman
empress-analyses
Analyses, figures, and artifacts for Empress.
fido
Multinomial Logistic-Normal Models (really fast)
gemelli
Gemelli is a toolbox for running both Robust Aitchison PCA (RPCA) and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
PyTorch-LBFGS
A PyTorch implementation of L-BFGS.
q2-bayes-types
qiime2 repository for Bayesian types
q2-feature-cv
To make cross validation on qiime2 feature tables seamless!
scipy
Scipy library main repository
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks