mortonjt

q2-ancombc

qiime2 plugin for ANCOMBC

asd_multiomics_analyses

Jupyter notebooks behind "Multi-omic analysis along the gut-brain axis points to a functional architecture of autism"

q2-differential

A collection of common differential abundance techniques

cockatoo

Birds are cool right?

GetData

Get microbiome data from various repos

iv-analysis

micro-stats-bench

A collection of simulated and real benchmarks for microbiome methodological tutorials and benhcmarks

atlas

ATLAS - Three commands to start analyzing your metagenome data

catvae

Categorical Variational Autoencoders

ColabFold

Making Protein folding accessible to all!

cookie-cutter

A templating workflow for new data analysis projects

deepblast

differential

empress

A fast and scalable phylogenetic tree viewer for microbiome data analysis

environment-files

gapc

Bellman's GAP compiler

gcp3

Genome coverage statistics using poisson point processes

integrated-omics

metadata-ideas

ms2deepscore

Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity

mudata

Multimodal Data (.h5mu) implementation for Python

NormAE

Batch effects removal method based on deep autoencoder and adversarial learning

Permutation_test

q2-fido

qiime2 plugin for Fido for high dimensional compositional time series analysis

q2-matchmaker

A qiime2 plugin for case-control differential abundance analysis

q2-sample-classifier

QIIME 2 plugin for machine learning prediction of sample data.

scikit-bio

Core objects, functions and statistics for working with biological data in Python.

scikit-bio-tutorials

Interactive tutorials for using scikit-bio in biological research

swa_gaussian

Code repo for "A Simple Baseline for Bayesian Uncertainty in Deep Learning"

tm-vec