mnarayan

quarter-baked

AFQ-Insight

Statistical learning for AFQ results

critical-rct

An informal review and synthesis of the different perspectives that all criticize RCTs or "evidence-based-X" in some way.

emprank

Empirical Ranking

awesome-surrogates

A correlate does not a surrogate make

minimal-mistakes

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

reading

Brief summaries of scientific papers I've read indexed via Github Issues

story

Beautiful responsive Hugo blog theme focused on simplicity and elegance, with many extra features including presentations, math typesetting, music notation, and search.

singularity-mriqc

Singularity specification for MRIQC

ggmClass

A matlab class for ggm estimation

ReScience-submission

ReScience submission repository

matlab-cliquer

A MATLAB interface to the C program Cliquer: quickly find cliques in graphs.

cookiecutter-reproducible-science

boilerplate for reproducible and transparent science

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

ddplot

Depth vs. Depth Plots

gramm

Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.

cpac-utils

Utility functions to fetch and organize preprocessed fMRI timeseries

gfdr

A toolbox of classic and generalized FDR control procedures

rankdist

A python package for statistical inference and comparisons of rankings

ForBES

Generic and efficient MATLAB solver for nonsmooth optimization problems

cookiecutter-mopackage

A cookiecutter project template for simple data analysis packages in Matlab/Octave

cookiecutter-shablona

Create cookiecutters from the uwescience/shablona project template

pyclime

Python wrapper for CLIME estimators

pyquic

Python wrapper for QUIC

netsci-stability

cookiecutter-remarkjs

Cookiecutter template for presentations using remark.js

modwt

An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, the gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.

hugo-paper-now

writing scientific article with hugo (port of PeerJ/paper-now)

dPCA

An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)

rs_signal_extract

BIDS App for resting state signal extraction using nilearn.