Neurostats

jf2016-skggm

Tutorials to estimate inverse covariance matrices using the skggm package

skggm

Gaussian graphical model estimation for scikit-learn

tutorial-prni-2017

This repository contains iPython notebooks that run on the octave kernel to accompany tutorial and slides presented at PRNI

neurocombat

python / numpy / pandas / patsy version of ComBat for removing batch effects.

2018-tms-netsci

Dream2014

Submission to Alzheimer's Disease Prediction Challenge 2014

fmri-site-effects

Uses regression and factor model approach to correct for site effects in fMRI volumes

GGLasso

A Python package for General Graphical Lasso computation

jekyll-now

Build a Jekyll blog in minutes, without touching the command line.

lesson-template

A lesson template for tutorials

netsci

Network Science toolbox focused on generalizing centrality and community structure

parcor

Partial correlation (w. shrinkage estimation) networks and subsequent network analysis

pglasso

Pathway Graphical Lasso

skmediate

story

Beautiful responsive Hugo blog theme focused on simplicity and elegance, with many extra features including presentations, math typesetting, music notation, and search.

awesome-site-effects

Resources to literature and tools on how to address unwanted between site variation in neuroimaging

change-scores

connectivity-diagnostics

A set of scripts for visual and quantitative checks of data based on spatio-temporal correlation structure in fMRI data

hbmhack-confounds

Conquering confounds and covariates in machine learning

MOnotebook

neurofinder

Benchmarking platform and competition for source extraction from imaging data