Marcin Magnus's repositories
Pocket-Plus-Calibre-Plugin
📚 Modified version of the Calibre plugin for Pocket. Now, you get your articles organized by your Pocket tags, and more!
emacs-pdb-mode
pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.
EvoClustRNA
RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io
awesome-rna-3D-tools
awesome tools for RNA
EmacsOrgModeClockingXBar
see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives
RNA-Structural-Bioinformatics-Crash-Course
RNA Structural Bioinformatics Crash Course & Data Science in Python
RNA-Puzzles-Standardized-Submissions
Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip
boox-wifi-mount-sync
boox-wifi-mount-sync - sync or mount your Boox device over WiFi
borg-search
Tools search borg archives/repos (also to search big files to remove them)
orgmode-capture-all
Capture ALL (with a right click) to OrgMode Inbox
PocketX-Calibre-Plugin
PocketX-Calibre-Plugin is an experimental version of Pocket-Plus-Calibre-Plugin (send articles from Pocket to your e-reader)
PyMOL4Spliceosome
Structures of the spliceosome processed to be easily viewed with PyMOL
rna-tools-webserver-engine
The light-weight, complete webserver engine used by me for servers: RNA/DNA-protein docking method http://genesilico.pl/NPDock, RNA 3D structure prediction method http://iimcb.genesilico.pl/SimRNAweb/, RNA 3D quality control, http://iimcb.genesilico.pl/mqapRNA/, building RNA models from recurrent 3D motifs http://genesilico.pl/rnamasonry
yeast-spotifier
spotifier - a script to process yeast plate images into figures, without fancy Deep Learning ;-) (yet)
gnome-shell-simple-message
Write message on top bar with dconf
homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
mmagnus.github.io
https://mmagnus.github.io
OpenComplex
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
PyMOL4Ribosome
PyMOL4Ribosome
RNA-Puzzles-toolkit-overview
RNA-Puzzles-toolkit-overview
rsRNASP
rsRNASP: A distance-dependent statistical potential based on residue separation for RNA 3D structure evaluation.