RNA-Puzzles's repositories
RNA_assessment
Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils.
standardized_dataset
Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip
comparison_metrics_list
Assessment metrics tools to compare RNA 3D structures.
toolkit-ansible-role
Ansible role for RNA-Puzzles Toolkit. Contains ansible-container config and an example playbook
Deformation_Profile
RNA deformation profile, to account for structure comparison in 2D
mcq4structures
A parent project for a set of subprojects related to Mean of Circular Quantities (MCQ).
raw_dataset_and_for_assessment
This repository includes all the submitted RNA structures in RNA-Puzzles, include the `raw_dataset` and the `normalized_dataset`
RNA-Puzzles-toolkit-overview
RNA-Puzzles-toolkit-overview
RNA_format
The submission format of RNA-Puzzles
viralcentre.github.io
A ribozyme database