Mike Lin's repositories
sqlite_zstd_vfs
SQLite3 extension for read/write storage compression with Zstandard
GenomicSQLite
Genomics Extension for SQLite
sqlite_web_vfs
SQLite3 extension for read-only HTTP(S) database access
chanzuckerberg.r-universe.dev
Configuration for publishing to R-Universe
RGenomicSQLite
[WIP / not yet ready] R bindings package for GenomicSQLite
ai4sqlite3
Natural language query assistant for SQLite databases
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
TileDB-SOMA
TileDB implementation of the single-cell SOMA API
idseq-web
Infectious Disease Sequencing Platform
iitj
Implicit Interval Trees (for Java)
htslib
C library for high-throughput sequencing data formats.
cpython
The Python programming language
vcf_line_splitter
Split a huge VCF file into parts, quickly
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
minimap2-scatter
WIP proof-of-concept
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
SQLiteCpp
SQLiteC++ (SQLiteCpp) is a smart and easy to use C++ SQLite3 wrapper.
miniwdl-cloud
SUPERSEDED BY https://github.com/miniwdl-ext/miniwdl-aws
GFA-spec
Graphical Fragment Assembly (GFA) Format Specification