IDseq · 
Infectious Disease Sequencing Platform
IDseq is an unbiased global software platform that helps scientists identify pathogens in metagenomic sequencing data.
- Discover - Identify the pathogen landscape
- Detect - Monitor and review potential outbreaks
- Decipher - Find potential infecting organisms in large datasets
A collaborative open project of Chan Zuckerberg Initiative and Chan Zuckerberg Biohub.
Check out our repositories:
- idseq-web - Frontend portal (here)
- idseq-dag - Bioinformatics pipeline and workflow engine
- idseq-cli - Command line upload interface
- idseq-bench - Pipeline benchmarking tools
Check out our user wiki for getting started as a user. Check out our dev wiki to get started as a developer.