Mike Lin (mlin)

mlin

Geek Repo

Location:Honolulu, HI, USA

Home Page:https://www.mlin.net

Twitter:@DNAmlin

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Organizations
ga4gh
openwdl
samtools
single-cell-data
vgteam

Mike Lin's starred repositories

roop

one-click face swap

Language:PythonLicense:GPL-3.0Stargazers:25549Issues:241Issues:0

codon

A high-performance, zero-overhead, extensible Python compiler using LLVM

Language:C++License:NOASSERTIONStargazers:13943Issues:134Issues:396

continue

⏩ Continue is the leading open-source AI code assistant. You can connect any models and any context to build custom autocomplete and chat experiences inside VS Code and JetBrains

Language:TypeScriptLicense:Apache-2.0Stargazers:12810Issues:66Issues:1071

prql

PRQL is a modern language for transforming data — a simple, powerful, pipelined SQL replacement

Language:RustLicense:Apache-2.0Stargazers:9575Issues:45Issues:957

llm-numbers

Numbers every LLM developer should know

vault-ai

OP Vault ChatGPT: Give ChatGPT long-term memory using the OP Stack (OpenAI + Pinecone Vector Database). Upload your own custom knowledge base files (PDF, txt, epub, etc) using a simple React frontend.

Language:JavaScriptLicense:MITStargazers:3244Issues:48Issues:57

mamba-minimal

Simple, minimal implementation of the Mamba SSM in one file of PyTorch.

Language:PythonLicense:Apache-2.0Stargazers:2413Issues:24Issues:24

cotowali

A statically typed scripting language that transpile into POSIX sh

Language:VLicense:MPL-2.0Stargazers:603Issues:5Issues:29

Preql

An interpreted relational query language that compiles to SQL.

Language:PythonLicense:NOASSERTIONStargazers:602Issues:14Issues:19

ipython-gpt

An ChatGPT integration for Jupyter Notebooks and the IPython Shell

Language:PythonLicense:MITStargazers:598Issues:3Issues:7

kotlin-interactive-shell

Kotlin Language Interactive Shell

Language:JavaLicense:Apache-2.0Stargazers:584Issues:28Issues:87

gpt-cli

Command-line interface for ChatGPT, Claude and Bard

Language:PythonLicense:MITStargazers:543Issues:9Issues:44

lambdash

Lambda shell - Run sh commands inside AWS Lambda environment

Language:ShellLicense:Apache-2.0Stargazers:530Issues:15Issues:6

libnfs

NFS client library

Language:CLicense:NOASSERTIONStargazers:495Issues:39Issues:234

kotlin-spark-api

This projects gives Kotlin bindings and several extensions for Apache Spark. We are looking to have this as a part of Apache Spark 3.x

Language:KotlinLicense:Apache-2.0Stargazers:447Issues:20Issues:90

UCE

UCE is a zero-shot foundation model for single-cell gene expression data

Language:PythonLicense:MITStargazers:120Issues:11Issues:37

simple-file-manager-for-amazon-efs

Serverless web application to manage data in your Amazon EFS Filesystem

Language:PythonLicense:Apache-2.0Stargazers:76Issues:21Issues:135

TileDB-Vector-Search

Cloud-native vector similarity search and storage with efficient, serverless scale-out

Language:Jupyter NotebookLicense:MITStargazers:48Issues:6Issues:6

pubmed-abstract-compiler

Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utility queries

Language:Jupyter NotebookStargazers:21Issues:1Issues:0

popvcf

Lossless VCF compression

wdl

Rust crates for working with Workflow Description Language (WDL) documents.

Language:RustLicense:Apache-2.0Stargazers:17Issues:4Issues:11

BioC-JSON

Tool that converts between BioC XML files and BioC JSON files

Language:PythonLicense:NOASSERTIONStargazers:15Issues:1Issues:1

chatgpt-cli

Simple CLI for ChatGPT using node.js

Language:JavaScriptStargazers:14Issues:2Issues:0

clamsa

ClaMSA (Classify Multiple Sequence Alignments).

gor-spark

Relational query engine that unites SparkSQL and GORpipe into a single declarative query framework.

Language:JavaLicense:AGPL-3.0Stargazers:6Issues:2Issues:0

miniwdl-omics-run

WDL launcher for AWS HealthOmics

Language:PythonLicense:MITStargazers:6Issues:2Issues:0

miniwdl-pre-commit

Plugin for pre-commit to check WDL files with miniwdl

Language:PythonLicense:MITStargazers:1Issues:0Issues:0

miniwdl-aws

Extends miniwdl to run workflows on AWS Batch & EFS

Language:PythonLicense:MITStargazers:1Issues:0Issues:0