mlin

GenomicSQLite

Genomics Extension for SQLite

sqlite_zstd_vfs

SQLite3 extension for read/write storage compression with Zstandard

PhyloCSF

Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions

spVCF

Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently

sqlite_web_vfs

SQLite3 extension for read-only HTTP(S) database access

gfabase

GFA insert into GenomicSQLite

iitii

Implicit Interval Tree with Interpolation Index

gvcf_norm

gVCF allele normalizer

GLnext

Scalable gVCF merging and joint variant calling

vcf_line_splitter

Split a huge VCF file into parts, quickly

miniwdl-cloud

SUPERSEDED BY https://github.com/miniwdl-ext/miniwdl-aws

miniwdl

A static analysis toolkit for the Workflow Description Language

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

GenomicSQLite-examples

ai4sqlite3

Natural language query assistant for SQLite databases

chanzuckerberg.r-universe.dev

Configuration for publishing to R-Universe

cpython

The Python programming language

GFA-spec

Graphical Fragment Assembly (GFA) Format Specification

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

htslib

C library for high-throughput sequencing data formats.

idseq-web

Infectious Disease Sequencing Platform

iitj

Implicit Interval Trees (for Java)

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

minimap2-scatter

WIP proof-of-concept

mlin

mlin.r-universe.dev

RGenomicSQLite

[WIP / not yet ready] R bindings package for GenomicSQLite

SQLiteCpp

SQLiteC++ (SQLiteCpp) is a smart and easy to use C++ SQLite3 wrapper.

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

TileDB-SOMA

TileDB implementation of the single-cell SOMA API