matt-sd-watson / spora

:mushroom: spora: Streamlined Phylogenomic Outbreak Report Analysis

https://matt-sd-watson.github.io/spora/

matt-sd-watson/spora Issues

add GA for Mac Os X matrix
Closed 2 years ago
rename to spora
Closed 2 years ago1
HTML report does not knit if rename is passed without names CSV
Closed 2 years ago1
--rename and --names-csv conflict in the output report for SNP distance
Closed 2 years ago1
--rename with names csv does not work if filter removes sequences
Closed 3 years ago
sum report breaks when --names-csv is supplied
Closed 3 years ago
Auto adjust tip lab size in summary report trees
Closed 3 years ago
auto-place treescale
Closed 3 years ago
interactive trees in summary report
Updated 2 years ago1
enable auto editing of margins for trees with tiplabs
Closed 3 years ago
Cannot detect focal sequence names in summary report if --rename is used
Closed 3 years ago