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Matthew Watson (matt-sd-watson)

matt-sd-watson

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Location:Toronto, ON, Canada

Home Page:https://www.linkedin.com/in/matt-sd-watson/

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Matthew Watson's repositories

FASTAfurious

:racing_car: Bundled utilities for manipulation and integration of FASTA files

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beernanza

memory match tile app implemented using a Swing-based GUI and object oriented concepts

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nextflow_for_nextstrain

Parallelization of Nextstrain builds and parameter testing using Nextflow

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spora

:mushroom: spora: Streamlined Phylogenomic Outbreak Report Analysis

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augur

Pipeline components for real-time phylodynamic analysis

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camlab-website

Hugo website for camlab Toronto

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civet3

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CopyscAT

Inferring CNV data from single cell ATAC seq

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cytoviewer

An interactive multi-channel image viewer for R

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dash-daq

Control components for Dash

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dash-extensions

The dash-extensions package is a collection of utility functions, syntax extensions, and Dash components that aim to improve the Dash development experience

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dash-uploader

The alternative upload component for python Dash applications.

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ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

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infercnv

Inferring CNV from Single-Cell RNA-Seq

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matt-sd-watson

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mitch

An R package for multi-dimensional pathway enrichment analysis

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MSDSHub

Hosts the website for MSDSHub.com

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ncov-tools

Small collection of tools for performing quality control on coronavirus sequencing data and genomes

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ncov-utils

Utility scripts and modules for processing ncov19 samples using the ivar pipeline

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ncov_one_off

one off analyses for the ncov/COVID-19 project

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nextflow_misc

Miscellaneous of development pipelines for bioinformatics processes

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nf-processes

modules for processing and analyzing single cell data using Nextflow

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pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

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pascrd

Programmatic Access to Single Cell Repositories for Downloading

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readimc

Python package for reading imaging mass cytometry (IMC) files

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scMatch

scMatch: a single-cell gene expression profile annotation tool using reference datasets

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scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

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seurat

R toolkit for single cell genomics

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snp-dists

Pairwise SNP distance matrix from a FASTA sequence alignment

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vsn-pipelines

A repository of pipelines for single-cell data in Nextflow DSL2

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