matt-sd-watson

matt-sd-watson

design-patterns

Resources for design patterns

steinbock

A toolkit for processing multiplexed tissue images

dash-daq

Control components for Dash

dash-extensions

The dash-extensions package is a collection of utility functions, syntax extensions, and Dash components that aim to improve the Dash development experience

readimc

Python package for reading imaging mass cytometry (IMC) files

cytoviewer

An interactive multi-channel image viewer for R

pascrd

Programmatic Access to Single Cell Repositories for Downloading

dash-uploader

The alternative upload component for python Dash applications.

camlab-website

Hugo website for camlab Toronto

spora

:mushroom: spora: Streamlined Phylogenomic Outbreak Report Analysis

infercnv

Inferring CNV from Single-Cell RNA-Seq

nf-processes

modules for processing and analyzing single cell data using Nextflow

FASTAfurious

:racing_car: Bundled utilities for manipulation and integration of FASTA files

seurat

R toolkit for single cell genomics

nextflow_for_nextstrain

Parallelization of Nextstrain builds and parameter testing using Nextflow

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

mitch

An R package for multi-dimensional pathway enrichment analysis

MSDSHub

Hosts the website for MSDSHub.com

scMatch

scMatch: a single-cell gene expression profile annotation tool using reference datasets

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

vsn-pipelines

A repository of pipelines for single-cell data in Nextflow DSL2

civet3

ncov_one_off

one off analyses for the ncov/COVID-19 project

augur

Pipeline components for real-time phylodynamic analysis

nextflow_misc

Miscellaneous of development pipelines for bioinformatics processes

snp-dists

Pairwise SNP distance matrix from a FASTA sequence alignment

CopyscAT

Inferring CNV data from single cell ATAC seq

ncov-tools

Small collection of tools for performing quality control on coronavirus sequencing data and genomes

beernanza

memory match tile app implemented using a Swing-based GUI and object oriented concepts