marija-iloska / gtpf-epidemiology

Particle Filter for SEIR models

Application of Generalized Two-Stage Particle Filter to Epidemiology Data - Measles

Directories

1. ref - Stores reference paper that describes epidemiology SEIR model with Google Trends Flu data.
2. figs - Stores .eps figures of the synthetic data example.
3. data - Stores measles data.

Synthetic Data example

1. Run the script main.m for a SEIR model
   • generates data - runs bootstrap particle filter - plots hidden states
2. Change the system settings to play with different examples

Real Data example - measles

1. In progress