Manuel Lera-Ramirez's repositories
ShareYourCloning
A web application to generate molecular cloning strategies in json format, and share them with others.
ShareYourCloning_backend
The backend application for ShareYourCloning
ShareYourCloning_frontend
The frontend application for ShareYourCloning
YeastDatabase
A symfony application to manage a yeast collection
biopython
Official git repository for Biopython (originally converted from CVS)
boilerplates
This is my personal template collection. Here you'll find templates, and configurations for various tools, and technologies.
CV
my CV
elabftw
:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.
example_drive_api
An example to use drive API in a simple html file
GenestorianLandingPageSource
Source code for Genestorian landing page
linkml
Linked Open Data Modeling Language
linkml-playground
linkml-playground
linkml_sqlmodel_issue
linkml_sqlmodel_issue
manulera.github.io
personal website
ontology_map_maker
Small SPA that makes ontology maps using mermaid
ove_playground
A minimal react app to play with teselagen's OVE
pombase_gtf_file
A script to convert pombase gff3 file into GFT format compatible with transvar.
poster_pombe2023
Poster for pombe Hiroshima meeting
pySBOL2
A pure Python implementation of the SBOL standard.
pysbol3_playground
Playing around with pysbol3
SBOL-utilities
Command-line utilities and scripts for manipulating SBOL data
sqlmodel
SQL databases in Python, designed for simplicity, compatibility, and robustness.
sqlmodel_tutorial
sqlmodel_tutorial
teemi
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
tg-oss
Teselagen Open Source modules
trying_teemi
Trying the teemi library
using_renv
An explanation on how to use renv package manager