Michael Jahn's repositories
WeightedTreemaps
Create Voronoi and Sunburst Treemaps from Hierarchical data
fluctuator
R package to Import and Modify SVG (XML) Graphic Files
lattice-tools
Panel functions and wrappers to extend the R lattice universe
genome-scale-models
Genome scale metabolic models in SBML format
TnSeq-pipe
TnSeq data processing workflow
R-notebook-crispri-lib
R markdown notebooks for analysis of CRISPR inhibition library data
R-notebook-ralstonia-proteome
Pipelines for data analysis and visualization of the Ralstonia proteome
CRISPRi-lib-pipe
Pipeline to process CRISPRi library sequencing data
ggcoverage
Visualize and annotate genomic coverage with ggplot2
openMS-workflows
workflows for openMS using KNIME framework
ShinyTreemaps
R Shiny app for easy creation of Voronoi and Sunburst treemaps
europe-by-numbers
The content of my blog, https://europebynumbers.wordpress.com/.
experimental-design
Tools and figures to aide experimental design, such as power analysis
ggrepel
:round_pushpin: Repel overlapping text labels away from each other.
jupyter-notebooks-misc
Jupyter notebooks for various unconnected projects
lab-notebook
Digital Laboratory Notebook with R markdown
m-jahn
Github profile page
m-jahn.github.io
Project descriptions, publication list, blog, and other resources related to my work
R-notebook-amino-acids
Effect of amino acid supplementation on fitness in a CRISPRi library
R-notebook-microswitches
Analysis of human Frizzled 5 receptor mutants
R-notebook-ralstonia-energy
Pipelines for data analysis and visualization of the Ralstonia energy metabolism
snakemake-workflow-template
A template for standard compliant snakemake-workflows
testpipeline
A small example pipeline used to test new nf-core infrastructure and common code.