Lance Parsons's repositories
usrse.github.io
US RSE umbrella web page
pf15-smallrna-rseto
Pf15 Small RNA-Seq analysis for Murphy Lab - Renee Seto Apr 2, 2024
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
slurm-tests
Scripts to test slurm
bioconda-recipes
Conda recipes for the bioconda channel.
us-rse-logo
logos, templates, and related resources
MitoRiboSeq
Codes for processing mitochondrial ribosome profiling data
tracebase-sample-list
List sample names from directory of AccuCor or Isocor files
tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
kas-seq-workflow
KAS-Seq Analysis Workflow
galaxytools
:microscope::books: Galaxy Tool wrappers
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
TigerFISH
Fork of FISH Image Analysis used at Princeton
WormCount
Estimate the count of C. Elegans from an image of a plate.
reference_processing
Process reference from NCBI for use with various RNA-Seq tools. Creates Fasta, GFF, GTF files. Currently written to work with bacteria.
cbutils
Miscellaneous Utilities
bsgenomeforge
Custom BSGenome packages for Bioconductor
blog
syndicated blog for research software engineer stories and experiences
tools-devteam
Contains a set of Galaxy Tools mostly written by the Galaxy Team.
plastid
Position-wise analysis of sequencing and genomics data
ElMaven
LC-MS data processing engine for large-scale metabolomic experiments.
toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.