lparsons / tracebase-sample-list

List sample names from directory of AccuCor or Isocor files

Tracebase Sample List

A simple tool that lists the samples in all of the AccuCor or Isocor files in a directory.

The intended use is to quickly get a list of all of the samples from all of the peak data files in a given directory to simplify filling out a sample sheet for Tracebase.

Install

pip install git+https://github.com/lparsons/tracebase-sample-list.git

Usage

tracebase-sample-list /path/to/accucor/files

Output

Output to STDOUT a tab delimited list with filename and sample_name.

Only .xlsx, .csv. and .tsv files are considered.