lparsons

galaxy_tools

Wrappers for galaxy tools

homebrew

The missing package manager for OS X.

ansible-miniconda

archaic_genome_data_browser

bedtools

A powerful toolset for genome arithmetic.

bioconda-utils

Utilities for building and managing bioconda recipes

cb_biotools

DEXSeq

earlham-galaxytools

Galaxy tools developed at TGAC

galaxy

Data intensive biology for everyone.

galaxy-maps

galaxy-site

Galaxy project website, aka Galaxy Community Hub

genometools

GenomeTools genome analysis system.

GenomicScores

Provide support to store and retrieve genomic scores associated to nucleotide positions along a genome

GSEAMA

Gene Set Enrichment Analysis Made Awesome

harvesting-tools

Collection of scripts and code snippets for data harvesting after generating the zip starter

homebrew-cask

a friendly homebrew-style CLI workflow for the administration of Mac applications distributed as binaries

homebrew-science

Scientific formulae for the Homebrew package manager

homebrew-tap

A Homebrew (http://brew.sh/) tap for Galaxy (http://galaxyproject.org/) related software.

lamaya_tn5_demultiplex

MACS

MACS -- Model-based Analysis of ChIP-Seq

maven

Maven GUI: Metabolomics Analysis and Visualization Engine

maven_core

MAVEN: Core Libraries

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nudup

NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in NuGEN products.

planemo

Command-line utilities to assist in developing tools for the Galaxy project.

plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).

RNAseq_pipeline

Scripts for the Tn5-TagSeq manuscript

sstar_scripts

standards

Documentation for standards and best practices from the Galaxy IUC