Louis Bergelson's repositories
renjin-docs
Documentation for Renjin, the R interpreter for the JVM
tree-sitter-java
Java grammar for tree-sitter
wdl
Workflow Description Language - Specification and Implementations
cromwell-tools
A collection of Python clients and accessory scripts for interacting with the Cromwell
ga4gh-schemablocks.github.io
Website of the GA4GH SchemaBlocks Project
google-auth-library-java
Open source Auth client library for Java
jstack-profiler
Simple java profiler that take jstack output as input
homebrew-louis
A personal homebrew tap
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
maven-badges
A node.js implementation of https://github.com/jirutka/maven-badges, originally created in ruby.
google-cloud-java
Google Cloud Client Library for Java
nucleus
Python and C++ code for reading and writing genomics data.
Hadoop-BAM
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
GenomicsDB
GenomicsDB
homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
gatk-downstream-test
project to help debug issue with gatk and maven
dataproc-initialization-actions
Run in all nodes of your cluster before the cluster starts - lets you customize your cluster
snappy-java
Snappy compressor/decompressor for Java
barclay
Command line argument parser and online documentation generation utilities for java command line programs.
adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
gradle-git-version
a Gradle plugin that uses `git describe` to produce a version string.
jopt-simple
Java library for parsing command line options
test-git-lfs
testing git-lfs
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
dataflow-java
Provides several Google Cloud Dataflow pipeline examples as well as useful utility classes.
travis-queue
Angular Travis Queue Dashboard
PyTables
PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data.
appengine-try-python-webapp2
code samples
annextest
testing git annex
my-new-project
test project